{ "_id": "6a1eeff2b401979e73412d68", "Package": "RobustPrediction", "Type": "Package", "Title": "Robust Tuning and Training for Cross-Source Prediction", "Version": "0.1.6", "Authors@R": "c(\nperson(\"Yuting\", \"He\", email = \"yutingh19@gmail.com\", role = c(\"aut\", \"cre\")),\nperson(\"Nicole\", \"Ellenbach\", role = \"ctb\"),\nperson(\"Roman\", \"Hornung\", role = \"ctb\"))", "Maintainer": "Yuting He ", "Description": "Provides robust parameter tuning and model training for\npredictive models applied across data sources where the data\ndistribution varies slightly from source to source. This\npackage implements three primary tuning methods:\ncross-validation-based internal tuning, external tuning, and\nthe 'RobustTuneC' method. External tuning includes a\nconservative option where parameters are tuned internally on\nthe training data and validating on an external dataset,\nproviding a slightly pessimistic AUC estimate. It supports\nLasso, Ridge, Random Forest, Boosting, and Support Vector\nMachine classifiers. Currently, only binary classification is\nsupported. The response variable must be the first column of\nthe dataset and a factor with exactly two levels. The tuning\nmethods are based on the paper by Nicole Ellenbach, Anne-Laure\nBoulesteix, Bernd Bischl, Kristian Unger, and Roman Hornung\n(2021) \"Improved Outcome Prediction Across Data Sources Through\nRobust Parameter Tuning\" .", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", "LazyData": "true", "URL": "https://github.com/Yuting-He/RobustPrediction", "Config/pak/sysreqs": "libgdal-dev gdal-bin libgeos-dev libglu1-mesa-dev\nlibgmp3-dev libgsl0-dev jags libicu-dev libxml2-dev libmpfr-dev\nlibopenmpi-dev libproj-dev", "Repository": "https://yuting-he.r-universe.dev", "Date/Publication": "2024-12-16 15:58:13 UTC", "RemoteUrl": "https://github.com/yuting-he/robustprediction", "RemoteRef": "HEAD", "RemoteSha": "81945018403de574e12f754d196c177b5d25a9d1", "Packaged": { "Date": "2026-05-19 08:28:24 UTC", "User": "root" }, "Author": "Yuting He [aut, cre],\nNicole Ellenbach [ctb],\nRoman Hornung [ctb]", "MD5sum": "576b17cd18d601cf8c637875fe7c4f58", "_user": "yuting-he", "_type": "src", "_file": "RobustPrediction_0.1.6.tar.gz", "_fileid": "a206d31ddbad84a66d8e1c921460031180b31728d709f359cb565f0694b45fbe", "_filesize": 336403, "_sha256": "a206d31ddbad84a66d8e1c921460031180b31728d709f359cb565f0694b45fbe", "_created": "2026-05-19T08:28:24.000Z", "_published": "2026-06-02T15:00:02.729Z", "_distro": "noble", "_jobs": [ { "job": 79101721447, "time": 165, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7078561006" }, { "job": 79101721958, "time": 157, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7078558422" }, { "job": 79101721156, "time": 191, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7078582509" }, { "job": 79101721148, "time": 192, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7078581135" }, { "job": 79101719900, "time": 204, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7078503408" }, { "job": 79101719974, "time": 128, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7361466313" }, { "job": 79101720720, "time": 104, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7078539422" }, { "job": 79101721058, "time": 109, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7078541387" }, { "job": 79101721291, "time": 110, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7078541773" } ], "_buildurl": "https://github.com/r-universe/yuting-he/actions/runs/26085441434", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/yuting-he/robustprediction", "_commit": { "id": "81945018403de574e12f754d196c177b5d25a9d1", "author": "Yuting He ", "committer": "Yuting He ", "message": "Remove overly optimistic AUC and add conservative external tuning with estperf\n", "time": 1734364693 }, "_maintainer": { "name": "Yuting He", "email": "yutingh19@gmail.com", "login": "yuting-he", "description": "", "uuid": 82456235 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "glmnet", "role": "Imports" }, { "package": "mboost", "role": "Imports" }, { "package": "mlr", "role": "Imports" }, { "package": "ranger", "role": "Imports" }, { "package": "e1071", "role": "Imports" }, { "package": "pROC", "role": "Imports" } ], "_owner": "yuting-he", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "yuting-he", "count": 11, "uuid": 82456235 } ], "_userbio": { "uuid": 82456235, "type": "user", "name": "Yuting-He" }, "_downloads": { "count": 164, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/RobustPrediction" }, "_devurl": "https://github.com/yuting-he/robustprediction", "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/RobustPrediction.html", "manual.pdf" ], "_homeurl": "https://github.com/yuting-he/robustprediction", "_realowner": "yuting-he", "_cranurl": true, "_releases": [ { "version": "0.1.4", "date": "2024-11-14" }, { "version": "0.1.7", "date": "2024-12-16" } ], "_exports": [ "tuneandtrain", "tuneandtrainExt", "tuneandtrainExtBoost", "tuneandtrainExtLasso", "tuneandtrainExtRF", "tuneandtrainExtRidge", "tuneandtrainExtSVM", "tuneandtrainInt", "tuneandtrainIntBoost", "tuneandtrainIntLasso", "tuneandtrainIntRF", "tuneandtrainIntRidge", "tuneandtrainIntSVM", "tuneandtrainRobustTuneC", "tuneandtrainRobustTuneCBoost", "tuneandtrainRobustTuneCLasso", "tuneandtrainRobustTuneCRF", "tuneandtrainRobustTuneCRidge", "tuneandtrainRobustTuneCSVM" ], "_datasets": [ { "name": "sample_data_extern", "title": "Sample External Validation Data Subset", "object": "sample_data_extern", "class": [ "data.frame" ], "fields": [ "y", "236694_at", "222356_at", "1554125_a_at", "232823_at", "205766_at", "1560446_at", "202565_s_at", "234887_at", "209687_at", "221592_at", "1570123_at", "241368_at", "243324_x_at", "224046_s_at", "202775_s_at", "216332_at", "1569545_at", "205946_at", "203547_at", "243239_at", "234245_at", "210832_x_at", "224549_x_at", "236628_at", "214848_at", "1553015_a_at", "1554199_at", "1557636_a_at", "1558511_s_at", "1561713_at", "1561883_at", "1568720_at", "1569168_at", "1569443_s_at", "1570103_at", "200916_at", "201554_x_at", "202371_at", "204481_at", "205831_at", "207061_at", "207423_s_at", "209896_s_at", "212646_at", "214068_at", "217727_x_at", "221103_s_at", "221785_at", "224207_x_at", "228257_at", "228877_at", "231173_at", "231328_s_at", "231639_at", "232221_x_at", "232349_x_at", "232849_at", "233601_at", "234403_at", "234585_at", "234650_at", "234897_s_at", "236071_at", "236689_at", "238551_at", "239414_at", "241034_at", "241131_at", "241897_at", "242611_at", "244805_at", "244866_at", "32259_at", "1552264_a_at", "1552880_at", "1553186_x_at", "1553372_at", "1553438_at", "1554299_at", "1554362_at", "1554491_a_at", "1555098_a_at", "1555990_at", "1556034_s_at", "1556822_s_at", "1556824_at", "1557278_s_at", "1558603_at", "1558890_at", "1560791_at", "1561083_at", "1561364_at", "1561553_at", "1562523_at", "1562613_at", "1563351_at", "1563473_at", "1566780_at", "1567257_at", "1569664_at", "1569882_at", "1570252_at", "201089_at", "201261_x_at", "202052_s_at", "202236_s_at", "202948_at", "203080_s_at", "203211_s_at", "203218_at", "203236_s_at", "203347_s_at", "203960_s_at", "204609_at", "204806_x_at", "204949_at", "204979_s_at", "205823_at", "205902_at", "205967_at", "206186_at", "207151_at", "207379_at", "207440_at", "207883_s_at", "208277_at", "208280_at", "209224_s_at", "209561_at", "209630_s_at", "210118_s_at", "210342_s_at", "211566_x_at", "211756_at", "212170_at", "212494_at", "213118_at", "214475_x_at", "214834_at", "215718_s_at", "216283_s_at", "217206_at", "217557_s_at", "217577_at", "218152_at", "218252_at", "219714_s_at", "220506_at", "220889_s_at", "221204_s_at", "221795_at", "222048_at", "223142_s_at", "223439_at", "223673_at", "224363_at", "224512_s_at", "224690_at", "224936_at", "225334_at", "225713_at", "225839_at", "226041_at", "226093_at", "226543_at", "227695_at", "228295_at", "228548_at", "229234_at", "229658_at", "229725_at", "230252_at", "230471_at", "231149_s_at", "231556_at", "231754_at", "232011_s_at", "233030_at", "234161_at", "235050_at", "235094_at", "235278_at", "235671_at", "235952_at", "236158_at", "236181_at", "237055_at", "237768_x_at", "238897_at", "239160_at", "239998_at", "240254_at", "240612_at", "240692_at", "240822_at", "240842_at", "241331_at", "241598_at", "241927_x_at", "242405_at" ], "rows": 50, "table": true, "tojson": true }, { "name": "sample_data_train", "title": "Sample Training Data Subset", "object": "sample_data_train", "class": [ "data.frame" ], "fields": [ "y", "236694_at", "222356_at", "1554125_a_at", "232823_at", "205766_at", "1560446_at", "202565_s_at", "234887_at", "209687_at", "221592_at", "1570123_at", "241368_at", "243324_x_at", "224046_s_at", "202775_s_at", "216332_at", "1569545_at", "205946_at", "203547_at", "243239_at", "234245_at", "210832_x_at", "224549_x_at", "236628_at", "214848_at", "1553015_a_at", "1554199_at", "1557636_a_at", "1558511_s_at", "1561713_at", "1561883_at", "1568720_at", "1569168_at", "1569443_s_at", "1570103_at", "200916_at", "201554_x_at", "202371_at", "204481_at", "205831_at", "207061_at", "207423_s_at", "209896_s_at", "212646_at", "214068_at", "217727_x_at", "221103_s_at", "221785_at", "224207_x_at", "228257_at", "228877_at", "231173_at", "231328_s_at", "231639_at", "232221_x_at", "232349_x_at", "232849_at", "233601_at", "234403_at", "234585_at", "234650_at", "234897_s_at", "236071_at", "236689_at", "238551_at", "239414_at", "241034_at", "241131_at", "241897_at", "242611_at", "244805_at", "244866_at", "32259_at", "1552264_a_at", "1552880_at", "1553186_x_at", "1553372_at", "1553438_at", "1554299_at", "1554362_at", "1554491_a_at", "1555098_a_at", "1555990_at", "1556034_s_at", "1556822_s_at", "1556824_at", "1557278_s_at", "1558603_at", "1558890_at", "1560791_at", "1561083_at", "1561364_at", "1561553_at", "1562523_at", "1562613_at", "1563351_at", "1563473_at", "1566780_at", "1567257_at", "1569664_at", "1569882_at", "1570252_at", "201089_at", "201261_x_at", "202052_s_at", "202236_s_at", "202948_at", "203080_s_at", "203211_s_at", "203218_at", "203236_s_at", "203347_s_at", "203960_s_at", "204609_at", "204806_x_at", "204949_at", "204979_s_at", "205823_at", "205902_at", "205967_at", "206186_at", "207151_at", "207379_at", "207440_at", "207883_s_at", "208277_at", "208280_at", "209224_s_at", "209561_at", "209630_s_at", "210118_s_at", "210342_s_at", "211566_x_at", "211756_at", "212170_at", "212494_at", "213118_at", "214475_x_at", "214834_at", "215718_s_at", "216283_s_at", "217206_at", "217557_s_at", "217577_at", "218152_at", "218252_at", "219714_s_at", "220506_at", "220889_s_at", "221204_s_at", "221795_at", "222048_at", "223142_s_at", "223439_at", "223673_at", "224363_at", "224512_s_at", "224690_at", "224936_at", "225334_at", "225713_at", "225839_at", "226041_at", "226093_at", "226543_at", "227695_at", "228295_at", "228548_at", "229234_at", "229658_at", "229725_at", "230252_at", "230471_at", "231149_s_at", "231556_at", "231754_at", "232011_s_at", "233030_at", "234161_at", "235050_at", "235094_at", "235278_at", "235671_at", "235952_at", "236158_at", "236181_at", "237055_at", "237768_x_at", "238897_at", "239160_at", "239998_at", "240254_at", "240612_at", "240692_at", "240822_at", "240842_at", "241331_at", "241598_at", "241927_x_at", "242405_at" ], "rows": 50, "table": true, "tojson": true } ], "_help": [ { "page": "RobustPrediction", "title": "Package Title: Robust Tuning and Training for Cross-Source Prediction", "topics": [ "RobustPrediction-package", "RobustPrediction" ] }, { "page": "sample_data_extern", "title": "Sample External Validation Data Subset", "topics": [ "sample_data_extern" ] }, { "page": "sample_data_train", "title": "Sample Training Data Subset", "topics": [ "sample_data_train" ] }, { "page": "tuneandtrain", "title": "Tune and Train Classifier", "topics": [ "tuneandtrain" ] }, { "page": "tuneandtrainExt", "title": "Tune and Train Classifier by Tuning Method Ext", "topics": [ "tuneandtrainExt" ] }, { "page": "tuneandtrainExtBoost", "title": "Tune and Train External Boosting", "topics": [ "tuneandtrainExtBoost" ] }, { "page": "tuneandtrainExtLasso", "title": "Tune and Train External Lasso", "topics": [ "tuneandtrainExtLasso" ] }, { "page": "tuneandtrainExtRF", "title": "Tune and Train External Random Forest", "topics": [ "tuneandtrainExtRF" ] }, { "page": "tuneandtrainExtRidge", "title": "Tune and Train External Ridge", "topics": [ "tuneandtrainExtRidge" ] }, { "page": "tuneandtrainExtSVM", "title": "Tune and Train External SVM", "topics": [ "tuneandtrainExtSVM" ] }, { "page": "tuneandtrainInt", "title": "Tune and Train by tuning method Int", "topics": [ "tuneandtrainInt" ] }, { "page": "tuneandtrainIntBoost", "title": "Tune and Train Internal Boosting", "topics": [ "tuneandtrainIntBoost" ] }, { "page": "tuneandtrainIntLasso", "title": "Tune and Train Internal Lasso", "topics": [ "tuneandtrainIntLasso" ] }, { "page": "tuneandtrainIntRF", "title": "Tune and Train Internal Random Forest", "topics": [ "tuneandtrainIntRF" ] }, { "page": "tuneandtrainIntRidge", "title": "Tune and Train Internal Ridge", "topics": [ "tuneandtrainIntRidge" ] }, { "page": "tuneandtrainIntSVM", "title": "Tune and Train Internal SVM", "topics": [ "tuneandtrainIntSVM" ] }, { "page": "tuneandtrainRobustTuneC", "title": "Tune and Train Classifier by Tuning Method RobustTuneC", "topics": [ "tuneandtrainRobustTuneC" ] }, { "page": "tuneandtrainRobustTuneCBoost", "title": "Tune and Train RobustTuneC Boosting", "topics": [ "tuneandtrainRobustTuneCBoost" ] }, { "page": "tuneandtrainRobustTuneCLasso", "title": "Tune and Train RobustTuneC Lasso", "topics": [ "tuneandtrainRobustTuneCLasso" ] }, { "page": "tuneandtrainRobustTuneCRF", "title": "Tune and Train RobustTuneC Random Forest", "topics": [ "tuneandtrainRobustTuneCRF" ] }, { "page": "tuneandtrainRobustTuneCRidge", "title": "Tune and Train RobustTuneC Ridge", "topics": [ "tuneandtrainRobustTuneCRidge" ] }, { "page": "tuneandtrainRobustTuneCSVM", "title": "Tune and Train RobustTuneC Support Vector Machine (SVM)", "topics": [ "tuneandtrainRobustTuneCSVM" ] } ], "_rundeps": [ "backports", "BBmisc", "checkmate", "class", "cli", "codetools", "cpp11", "data.table", "e1071", "farver", "fastmatch", "foreach", "Formula", "ggplot2", "glmnet", "glue", "gtable", "inum", "isoband", "iterators", "labeling", "lattice", "libcoin", "lifecycle", "MASS", "Matrix", "mboost", "mlr", "mvtnorm", "nnls", "parallelMap", "ParamHelpers", "partykit", "pROC", "proxy", "quadprog", "R6", "ranger", "RColorBrewer", "Rcpp", "RcppEigen", "rlang", "rpart", "S7", "scales", "shape", "stabs", "stringi", "survival", "vctrs", "viridisLite", "withr", "XML" ], "_score": 2, "_indexed": true, "_nocasepkg": "robustprediction", "_universes": [ "yuting-he" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.6", "date": "2026-05-19T08:30:44.000Z", "distro": "noble", "commit": "81945018403de574e12f754d196c177b5d25a9d1", "fileid": "d3266abe8af7270934fb58b5a7c50039f1fd680f7db9f7d689b1e0b4e1eac690", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yuting-he/actions/runs/26085441434" }, { "r": "4.6.0", "os": "linux", "version": "0.1.6", "date": "2026-05-19T08:30:41.000Z", "distro": "noble", "commit": "81945018403de574e12f754d196c177b5d25a9d1", "fileid": "bc1bf07be9a36b659ecbd417bd46b049186cdba64958478209658504987899ba", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yuting-he/actions/runs/26085441434" }, { "r": "4.5.3", "os": "mac", "version": "0.1.6", "date": "2026-05-19T08:32:01.000Z", "commit": "81945018403de574e12f754d196c177b5d25a9d1", "fileid": "1a94e3b694f3362bb417001b5a8c7da475559658dba101bd8c8925816bb0c7ec", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yuting-he/actions/runs/26085441434" }, { "r": "4.6.0", "os": "mac", "version": "0.1.6", "date": "2026-05-19T08:31:48.000Z", "commit": "81945018403de574e12f754d196c177b5d25a9d1", "fileid": "3f7a2a100d997ec84db89c5b8cf6beb45bea703cac32caeb5c480adac42054b3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yuting-he/actions/runs/26085441434" }, { "r": "4.7.0", "os": "win", "version": "0.1.6", "date": "2026-05-19T08:29:40.000Z", "commit": "81945018403de574e12f754d196c177b5d25a9d1", "fileid": "b797b717d70437c2258b3670ea88e71ba2c7d9ab665ee90028a26505bf424b18", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yuting-he/actions/runs/26085441434" }, { "r": "4.5.3", "os": "win", "version": "0.1.6", "date": "2026-05-19T08:29:44.000Z", "commit": "81945018403de574e12f754d196c177b5d25a9d1", "fileid": "6ec3b5140ac8ccedb155b8c29e0f4cd098ea532e7d7df11e2d7f60c4a007c1b9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yuting-he/actions/runs/26085441434" }, { "r": "4.6.0", "os": "win", "version": "0.1.6", "date": "2026-05-19T08:29:43.000Z", "commit": "81945018403de574e12f754d196c177b5d25a9d1", "fileid": "6f75bf1f99a7a4edd7cf2916e04ff67abcde98d97b5cb217a1dd96f2397f27b9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yuting-he/actions/runs/26085441434" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.6", "date": "2026-06-02T14:59:35.000Z", "commit": "81945018403de574e12f754d196c177b5d25a9d1", "fileid": "e3dcae50b3a81639eeb3c1da0063715ead653be1ac793bfe8905728bd3603f19", "status": "success", "buildurl": "https://github.com/r-universe/yuting-he/actions/runs/26085441434" } ] }